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clustal-w program  (MacVector inc)

 
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    MacVector inc clustal-w program
    Clustal W Program, supplied by MacVector inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/clustal-w+program/clustal+w+program/us12358956-149-23-26
    Average 90 stars, based on 1 article reviews
    clustal-w program - by Bioz Stars, 2026-09
    90/100 stars

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    other:

    Article Title: Peptides for binding epidermal growth factor
    Article Snippet: In some embodiments, sequence identity can be determined by the CLUSTAL-W program in MacVector version 6.5, operated with default parameters, including an open gap penalty of 10.0, an extended gap penalty of 0.1, and a BLOSUM 30 similarity matrix.

    Article Title: Methods and compositions for wound treatment
    Article Snippet: One suitable alignment of selected sequences in order to determine “% identity” between two or more sequences, is performed using, for example, the CLUSTAL-W program in MacVector version 6.5, operated with default parameters, including an open gap penalty of 10.0, an extended gap penalty of 0.1, and a BLOSUM 30 similarity matrix, or similar tools or programs known to those skilled in the art.

    Article Title: Laccases, compositions and methods of use
    Article Snippet: An alignment of selected sequences in order to determine “% identity” between two or more sequences, may be performed using, for example, the CLUSTAL-W program in MacVector version 6.5, operated with default parameters, including an open gap penalty of 10.0, an extended gap penalty of 0.1, and a BLOSUM 30 similarity matrix.

    Article Title: Nanopore protein conjugates and uses thereof
    Article Snippet: In certain example embodiments, a preferred alignment of selected sequences in order to determine “% identity” between two or more sequences, is performed using for example, the CLUSTAL-W program in MacVector version 13.0.7, operated with default parameters, including an open gap penalty of 10.0, an extended gap penalty of 0.1, and a BLOSUM 30 similarity matrix.

    Article Title: GENETIC VARIATION AMONG STRAINS OF PSEUDOPFIESTERIA SHUMWAYAE AND PFIESTERIA PISCICIDA (DINOPHYCEAE)(1).
    Article Snippet: The putatively toxic dinoflagellates Pseudopfiesteria shumwayae (Glasgow et J. M.. Burkh.). Litaker, Steid., P. L. Mason, Shields et P. A. Tester and Pfiesteria piscicida Steid. et J. M. Burkh. have been implicated in massive fish kills and of having negative impacts on human health along the mid-Atlantic seaboard of the USA.

    Article Title: Alpha-hemolysin variants and uses thereof
    Article Snippet: An alignment of selected sequences in order to determine “% identity” between two or more sequences, may be performed using for example, the CLUSTAL-W program in MacVector version 13.0.7, operated with default parameters, including an open gap penalty of 10.0, an extended gap penalty of 0.1, and a BLOSUM 30 similarity matrix.

    Article Title: Methods for forming lipid bilayers on biochips
    Article Snippet: A preferred alignment of selected sequences in order to determine “% identity” between two or more sequences, is performed using for example, the CLUSTAL-W program in MacVector version 13.0.7, operated with default parameters, including an open gap penalty of 10.0, an extended gap penalty of 0.1, and a BLOSUM 30 similarity matrix.

    Article Title: BGL6 beta-glucosidase and nucleic acids encoding the same
    Article Snippet: A preferred alignment of selected sequences in order to determine “% identity” between two or more sequences, is performed using for example, the CLUSTAL-W program in MacVector version 6.5, operated with default parameters, including an open gap penalty of 10.0, an extended gap penalty of 0.1, and a BLOSUM 30 similarity matrix.



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    Fig. 1. Molecular characterization of CPB proteasome subunit beta type-5 (CPB-PSMB5). (A) Prediction of signature motifs and alignment of nucleotide sequences of CPB-PSMB5 with other four well-known insect and potato plant PSMB5. Sequence alignment used Clustal W program of MegAlign (DNASTAR, Version 7.0). Species acronyms and GenBank accession numbers of PSMB5 amino acids are listed in Table S1. (B) Predicted three-dimensional structure of CPB-PSMB5 showing key structural domains. Alpha-helices and beta-sheets are depicted in the model as cyan, and yellow, respectively. The beta subunit interaction site domain is highlighted in brown. Green regions represent the active site. (C) Phylogenetic tree of CPB-PSMB5 (highlighted in a red rounded rectangle) and other PSMB5 sequences from different insect orders. The tree was generated with MEGA 7 using Neighbor-joining method. Bootstrap values on nodes were obtained with 1000 replicates. GenBank accession numbers are provided in Supplementary Table S1. (For interpretation of the references to color in this figure legend, the reader is referred to the web version of this article.)

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    Techniques: Sequencing, Generated